Basic Information
Locus ID:
gene:ENSEOMG00000019355
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 48745940 | 48749355 | - | gene:ENSEOMG00000019355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 45,340.57 Da | 36.33 | 85.30 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 91 | 2.7E-24 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 330 | 0.0087 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 386 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 247 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 290 | 0.061 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 112 | 391 | 1.14E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 400 | 1.1E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 294 | 330 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 5.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 198 | 3.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 387 | 7.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 256 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 332 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 354 | 388 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 207 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 214 | 250 | 9.309238 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 317 | 331 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 185 | 199 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 185 | 199 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 277 | 291 | 1.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_021753061.1 | WD-40 repeat-containing protein MSI2-like [Chenopodium quinoa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LGD6 | CAF1C_H4-bd domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology