Basic Information
Locus ID:
gene:ENSEOMG00000019314
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 41060666 | 41069318 | + | gene:ENSEOMG00000019314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 71,672.89 Da | 36.64 | 86.90 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04053 | Coatomer WD associated region | 40 | 484 | 6.2E-164 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 69 | 213 | 7.32E-10 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 311 | 519 | 1.2E-84 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 609 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_021736817.1 | coatomer subunit beta'-1-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LNB0 | Coatomer subunit beta' OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology