Basic Information
Locus ID:
gene:ENSEOMG00000019274
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 42827411 | 42829524 | - | gene:ENSEOMG00000019274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 33,217.58 Da | 37.83 | 77.31 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 5 | 33 | 2.9E-5 | - |
| SMART | SM00668 | ctlh | 34 | 92 | 3.1E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.968365 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 294 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_021736656.1 | protein TOPLESS [Chenopodium quinoa] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6PSP2 | Protein TOPLESS like (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology