Basic Information
Locus ID:
gene:ENSEOMG00000018162
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 19 | 4637293 | 4643012 | - | gene:ENSEOMG00000018162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 42,584.12 Da | 44.97 | 82.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 153 | 202 | 2.48731E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.40009E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 358 | 393 | 1.1E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 278 | 333 | 9.6E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 159 | 197 | 1.4E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.8E-20 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 211 | 3.78E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 337 | 400 | 9.0E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 275 | 339 | 8.76E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 1.89E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 351 | 398 | 1.0E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 152 | 202 | 3.1E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 268 | 334 | 1.1E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.0E-26 | - |
| SMART | SM00727 | CBM | 276 | 319 | 3.0E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 358 | 395 | 4.7E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 159 | 199 | 6.1E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.6E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 400 | 2.6E-109 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 355 | 396 | 13.703554 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.390202 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 157 | 200 | 12.811962 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 368 | 8.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 304 | 326 | 8.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 369 | 383 | 8.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 384 | 399 | 8.7E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 119 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021763544.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LAU3 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology