Basic Information
Locus ID:
gene:ENSEOMG00000017891
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 477089 | 489775 | + | gene:ENSEOMG00000017891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 110,462.45 Da | 46.90 | 81.39 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 263 | 584 | 5.31926E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 840 | 944 | 3.82406E-52 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 700 | 736 | 1.4E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 839 | 935 | 1.9E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 281 | 661 | 2.5E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 247 | 584 | 3.1E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 696 | 742 | 1.83E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 592 | 991 | 1.19E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 236 | 330 | 4.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 599 | 992 | 6.8E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 445 | 597 | 1.5E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 346 | 437 | 1.6E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 750 | 2.4E-11 | IPR013083 |
| SMART | SM00490 | helicmild6 | 852 | 935 | 2.7E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 259 | 551 | 1.3E-26 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 700 | 739 | 11.471321 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 824 | 988 | 13.795333 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 278 | 546 | 13.30069 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 715 | 724 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS17 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology