Basic Information
Locus ID:
gene:ENSEOMG00000017688
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 18 | 4836810 | 4842245 | - | gene:ENSEOMG00000017688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 39,408.68 Da | 49.29 | 82.86 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 115 | 164 | 1.21882E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.20995E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 121 | 159 | 1.2E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.1E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 319 | 354 | 9.6E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 238 | 293 | 1.2E-22 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 235 | 300 | 2.75E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 300 | 361 | 9.97E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 118 | 172 | 1.33E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 3.91E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 228 | 294 | 6.6E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 2.7E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 114 | 164 | 9.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 312 | 359 | 9.1E-23 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.6E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 121 | 161 | 6.1E-6 | IPR015940 |
| SMART | SM00727 | CBM | 236 | 279 | 1.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 319 | 356 | 4.7E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 91 | 361 | 1.9E-78 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 316 | 357 | 13.703554 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.239443 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 119 | 162 | 12.932447 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 344 | 6.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 329 | 6.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 360 | 6.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 264 | 286 | 6.2E-33 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021755143.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology