Basic Information
Locus ID:
gene:ENSEOMG00000017494
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 41884790 | 41890607 | - | gene:ENSEOMG00000017494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 163,958.80 Da | 35.96 | 106.25 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 897 | 1191 | 1.87398E-90 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 281 | 568 | 8.9997E-89 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 594 | 794 | 3.76017E-110 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1214 | 1435 | 1.59603E-119 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 899 | 1139 | 1.1E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1233 | 1382 | 9.2E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 612 | 746 | 3.5E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 281 | 547 | 1.9E-22 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 268 | 579 | 6.41E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1209 | 1444 | 9.11E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 884 | 1187 | 1.29E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 589 | 816 | 6.68E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 577 | 827 | 2.6E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1199 | 1453 | 2.4E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 252 | 576 | 6.1E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 862 | 1196 | 2.0E-59 | IPR036640 |
| SMART | SM00382 | AAA_5 | 621 | 794 | 2.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1242 | 1435 | 2.9E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1218 | 1451 | 19.28117 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 596 | 817 | 22.842577 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 280 | 560 | 31.002329 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 899 | 1179 | 36.293922 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 719 | 733 | - | IPR017871 |
| Coils | Coil | Coil | 441 | 461 | - | - |
| Coils | Coil | Coil | 854 | 874 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021731880.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology