Basic Information
Locus ID:
gene:ENSEOMG00000016680
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 18 | 6223073 | 6224332 | + | gene:ENSEOMG00000016680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 42,260.00 Da | 44.63 | 98.57 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 57 | 95 | 1.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 94 | 1.96E-11 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 348 | 3.4E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 54 | 323 | 1.0E-8 | IPR032675 |
| SMART | SM00256 | fbox_2 | 61 | 101 | 4.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 55 | 105 | 13.551112 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78760.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021734883.1 | uncharacterized protein LOC110701556 [Chenopodium quinoa] | 0 |
| Q9ZV94 | Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana OX=3702 GN=At1g78760 PE=4 SV=1 | 0 | |
| TrEMBL | A0A484NH86 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS42085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |