Basic Information
Locus ID:
gene:ENSEOMG00000016355
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 35952743 | 35954314 | - | gene:ENSEOMG00000016355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 25,671.72 Da | 15.52 | 90.76 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 214 | 1.56909E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 97 | 137 | 7.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 92 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 48 | 8.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 179 | 8.6E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 216 | 3.87E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 221 | 1.3E-75 | IPR015943 |
| SMART | SM00320 | WD40_4 | 95 | 137 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 92 | 3.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 48 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 179 | 1.3E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 146 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 101 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 16 | 48 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 188 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 59 | 95 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 48 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 179 | 11.550137 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 35 | 49 | 4.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 79 | 93 | 4.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 4.4E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42010.2 | - | 0 |
| RefSeq | XP_021774170.1 | coatomer subunit beta'-3-like [Chenopodium quinoa] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6WDY8 | Coatomer subunit beta'-2-like OS=Gossypium australe OX=47621 GN=copb2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology