Basic Information
Locus ID:
gene:ENSEOMG00000015320
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 16 | 43047096 | 43051954 | - | gene:ENSEOMG00000015320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 72,051.48 Da | 31.29 | 71.73 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 436 | 621 | 1.1605E-58 | - |
| CDD | cd10320 | RGL4_N | 4 | 291 | 5.44407E-69 | - |
| CDD | cd10316 | RGL4_M | 325 | 424 | 1.39372E-28 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 5 | 194 | 3.0E-83 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 348 | 419 | 1.7E-21 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 434 | 620 | 2.9E-57 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 344 | 420 | 1.06E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 431 | 621 | 2.04E-52 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 7 | 266 | 4.71E-8 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 432 | 621 | 5.8E-23 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 3 | 277 | 3.8E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 348 | 420 | 1.1E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24430.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021759799.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LK81 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology