Basic Information
Locus ID:
gene:ENSEOMG00000015217
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 16 | 41863694 | 41872358 | + | gene:ENSEOMG00000015217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 97,164.81 Da | 46.97 | 80.32 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 78 | 115 | 1.5E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 526 | 847 | 7.3E-43 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 7.32E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 522 | 853 | 1.79E-79 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 121 | 1.3E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 519 | 852 | 7.2E-87 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 526 | 850 | 47.813881 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 11.44711 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 527 | 542 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 372 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021740339.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MEI2 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology