Basic Information
Locus ID:
gene:ENSEOMG00000014834
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 15 | 50531581 | 50539397 | - | gene:ENSEOMG00000014834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 77,600.61 Da | 51.80 | 73.93 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 210 | 4.70687E-32 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 81 | 166 | 1.2E-11 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 396 | 468 | 3.7E-6 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 237 | 9.3E-47 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 245 | 334 | 2.6E-34 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 338 | 396 | 4.8E-14 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 335 | 1.96E-40 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 337 | 463 | 5.3E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 208 | 3.6E-52 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 245 | 336 | 2.6E-38 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 236 | 4.5E-95 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 4.5E-95 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 337 | 452 | 3.8E-30 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 508 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021744680.1 | nuclear poly(A) polymerase 1-like [Chenopodium quinoa] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MJ40 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology