Basic Information
Locus ID:
gene:ENSEOMG00000014449
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 15 | 13820759 | 13829076 | - | gene:ENSEOMG00000014449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 81,779.65 Da | 64.88 | 67.21 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 650 | 745 | 1.16631E-34 | - |
| CDD | cd00201 | WW | 23 | 52 | 6.10991E-6 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.7E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 455 | 625 | 2.7E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 662 | 744 | 1.3E-17 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 2.7E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 414 | 638 | 8.63E-73 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 650 | 745 | 3.67E-24 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 640 | 745 | 7.9E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 405 | 639 | 3.8E-90 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 55 | 2.3E-6 | - |
| SMART | SM00490 | helicmild6 | 686 | 745 | 0.0011 | IPR001650 |
| SMART | SM00487 | ultradead3 | 450 | 653 | 6.7E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 4.0E-8 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 462 | 636 | 31.320377 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 665 | 745 | 14.865905 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 431 | 459 | 11.408521 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8415 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 582 | 590 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 249 | - | - |
| Coils | Coil | Coil | 741 | 745 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology