Basic Information
Locus ID:
gene:ENSEOMG00000014412
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 16 | 43035057 | 43044993 | - | gene:ENSEOMG00000014412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 61,657.36 Da | 35.85 | 71.57 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 332 | 431 | 4.22458E-30 | IPR029413 |
| CDD | cd10320 | RGL4_N | 14 | 298 | 7.1216E-67 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 462 | 535 | 1.6E-19 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 355 | 426 | 1.5E-21 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 11 | 201 | 2.3E-80 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 459 | 535 | 6.38E-16 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 15 | 291 | 3.45E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 329 | 426 | 6.47E-11 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 4 | 302 | 2.3E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 330 | 429 | 1.5E-9 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.2 | - | 0 |
| RefSeq | XP_021759643.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LK81 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology