Basic Information
Locus ID:
gene:ENSEOMG00000013989
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 17 | 41855670 | 41861142 | + | gene:ENSEOMG00000013989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 120,445.28 Da | 39.42 | 105.77 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1 | 192 | 8.90544E-63 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 519 | 813 | 1.37784E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 836 | 1056 | 3.83818E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 218 | 418 | 4.63783E-113 | - |
| Pfam | PF00005 | ABC transporter | 855 | 1003 | 7.1E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 236 | 370 | 6.3E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2 | 171 | 1.9E-15 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 521 | 762 | 3.7E-30 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 518 | 819 | 9.16E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 213 | 440 | 7.79E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2 | 203 | 3.92E-19 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 831 | 1067 | 2.0E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 201 | 453 | 2.3E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 200 | 8.2E-33 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 821 | 1074 | 4.4E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 484 | 819 | 7.2E-62 | IPR036640 |
| SMART | SM00382 | AAA_5 | 245 | 418 | 5.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 864 | 1056 | 2.5E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 838 | 1072 | 18.794312 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 220 | 441 | 22.609152 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 184 | 24.349329 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 521 | 801 | 36.584839 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 343 | 357 | - | IPR017871 |
| Coils | Coil | Coil | 65 | 85 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology