Basic Information
Locus ID:
gene:ENSEOMG00000013532
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 16 | 462269 | 470743 | - | gene:ENSEOMG00000013532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 41,930.85 Da | 50.91 | 77.22 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 59 | 96 | 2.3E-11 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 150 | 363 | 4.6E-23 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 55 | 98 | 1.92E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 146 | 365 | 8.83E-57 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 47 | 102 | 4.5E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 141 | 368 | 2.4E-60 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 150 | 371 | 29.102417 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 59 | 96 | 11.965635 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 59 | 96 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 151 | 166 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021755587.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXU6 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology