Basic Information
Locus ID:
gene:ENSEOMG00000012326
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 14 | 43933739 | 43937107 | - | gene:ENSEOMG00000012326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 25,400.51 Da | 44.47 | 78.74 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 111 | 163 | 4.28751E-10 | - |
| Pfam | PF12906 | RING-variant domain | 111 | 162 | 3.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 165 | 7.06E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 172 | 2.0E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 110 | 163 | 2.4E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 103 | 169 | 18.071077 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021724104.1 | uncharacterized protein LOC110691468 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QVC1 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_137110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology