Basic Information
Locus ID:
gene:ENSEOMG00000011711
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 13 | 7649052 | 7654017 | - | gene:ENSEOMG00000011711 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 59,838.35 Da | 35.21 | 83.80 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 366 | 0.036 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 18 | 515 | 1.18E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 131 | 2.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 158 | 382 | 8.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 383 | 525 | 8.7E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 30 | 70 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 6.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 281 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 458 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 513 | 79.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 48 | 79 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 334 | 368 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 375 | 11.778342 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 552 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KNW6 | Topless-related protein 3-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |