Basic Information
Locus ID:
gene:ENSEOMG00000011604
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 14 | 8117546 | 8125091 | + | gene:ENSEOMG00000011604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 45,548.48 Da | 48.84 | 70.38 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 1.4342E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 5.27942E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 335 | 1.09775E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 328 | 7.8E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 2.6E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 2.7E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 55 | 219 | 8.15E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 250 | 339 | 3.12E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 219 | 6.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 3.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 339 | 4.1E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 3.5E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 5.3E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 262 | 331 | 2.4E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 15.306254 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 335 | 14.828703 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.369957 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021749999.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology