Basic Information
Locus ID:
gene:ENSEOMG00000011286
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 14 | 1378760 | 1388924 | + | gene:ENSEOMG00000011286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 121,929.06 Da | 40.26 | 79.04 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 893 | 926 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 484 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 527 | 0.086 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 867 | 1069 | 3.66E-15 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 471 | 931 | 1.57E-41 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 527 | 8.97E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 698 | 5.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 794 | 1076 | 4.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 507 | 3.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 799 | 841 | 27.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.8E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.1E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 844 | 884 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 437 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 574 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 978 | 1016 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 887 | 926 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.0064 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.694066 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.570789 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 894 | 928 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 894 | 935 | 12.680634 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1102 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_021760766.1 | topless-related protein 4-like [Chenopodium quinoa] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology