Basic Information
Locus ID:
gene:ENSEOMG00000011071
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 14 | 49515714 | 49524478 | - | gene:ENSEOMG00000011071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 79,993.35 Da | 44.09 | 85.33 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 568 | 675 | 8.08294E-56 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 11 | 295 | 2.64943E-83 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 411 | 447 | 2.8E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 10 | 373 | 2.8E-69 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 565 | 665 | 7.5E-17 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 407 | 454 | 2.29E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 11 | 295 | 1.3E-39 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 304 | 722 | 1.57E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 308 | 404 | 8.8E-6 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 463 | 2.2E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 1 | 142 | 3.6E-18 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 467 | 722 | 2.3E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 143 | 307 | 1.1E-30 | IPR038718 |
| SMART | SM00487 | ultradead3 | 2 | 262 | 1.0E-15 | IPR014001 |
| SMART | SM00184 | ring_2 | 411 | 449 | 3.5E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 582 | 665 | 2.9E-20 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 559 | 718 | 15.488329 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 411 | 447 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 5 | 257 | 13.413862 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 426 | 435 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021726387.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LLB4 | Helicase ATP-binding domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology