Basic Information
Locus ID:
gene:ENSEOMG00000008730
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 13 | 33023729 | 33035150 | - | gene:ENSEOMG00000008730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 54,409.81 Da | 53.83 | 70.61 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 185 | 314 | 3.33006E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 197 | 305 | 6.6E-34 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 2 | 160 | 3.4E-45 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 38 | 321 | 2.54E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 174 | 5.7E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 175 | 346 | 2.0E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 1 | 188 | 3.5E-48 | IPR014001 |
| SMART | SM00490 | helicmild6 | 225 | 305 | 1.7E-34 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 171 | 29.364996 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 200 | 344 | 25.76083 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 117 | 125 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 404 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021733054.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MUF8 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology