Basic Information
Locus ID:
gene:ENSEOMG00000007815
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 59178624 | 59190685 | + | gene:ENSEOMG00000007815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 79,316.51 Da | 44.12 | 89.06 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 56 | 259 | 3.53989E-124 | - |
| CDD | cd18794 | SF2_C_RecQ | 260 | 396 | 1.14447E-70 | - |
| Pfam | PF16124 | RecQ zinc-binding | 399 | 454 | 3.8E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 75 | 239 | 3.7E-17 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 606 | 666 | 5.9E-8 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 292 | 386 | 4.5E-16 | IPR001650 |
| SUPERFAMILY | SSF47819 | HRDC-like | 594 | 678 | 9.48E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 402 | 2.21E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 484 | 581 | 8.8E-23 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 603 | 669 | 3.0E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 260 | 457 | 3.3E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 259 | 1.7E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 64 | 268 | 3.7E-22 | IPR014001 |
| SMART | SM00490 | helicmild6 | 306 | 387 | 5.6E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 69 | 469 | 5.9E-157 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 597 | 676 | 11.687595 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 277 | 426 | 19.735756 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 252 | 23.605738 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 706 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021725557.1 | mediator of RNA polymerase II transcription subunit 34-like [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MCW2 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology