Basic Information
Locus ID:
gene:ENSEOMG00000007118
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 5766017 | 5772460 | - | gene:ENSEOMG00000007118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 127,384.71 Da | 34.48 | 88.67 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 9 | 83 | 8.77473E-9 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 372 | 959 | 3.6E-178 | IPR007855 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 80 | 3.4E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 8 | 97 | 4.89E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 6 | 93 | 8.3E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 8 | 83 | 6.2E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 87 | 10.786573 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_021850607.1 | RNA-dependent RNA polymerase 2 [Spinacia oleracea] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RCQ7 | RNA-dependent RNA polymerase OS=Spinacia oleracea OX=3562 GN=SOVF_081360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology