Basic Information
Locus ID:
gene:ENSEOMG00000006997
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 364303 | 367065 | + | gene:ENSEOMG00000006997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 52,851.68 Da | 56.90 | 74.66 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 124 | 439 | 4.3E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 80 | 475 | 2.84E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 76 | 469 | 4.8E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 362 | 383 | 1800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 333 | 354 | 21.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 280 | 301 | 550.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 323 | 2500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 253 | 279 | 28.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 310 | 323 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021768653.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M7B2 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology