Basic Information
Locus ID:
gene:ENSEOMG00000006572
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 12 | 2398110 | 2400978 | - | gene:ENSEOMG00000006572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 55,455.67 Da | 30.59 | 96.65 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 165 | 207 | 1.31316E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 330 | 368 | 2.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 288 | 327 | 6.7E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 371 | 409 | 2.1E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 453 | 492 | 2.6E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 161 | 231 | 4.0E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 237 | 1.03E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 259 | 515 | 8.47E-49 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 234 | 6.0E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 395 | 517 | 7.8E-19 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 241 | 394 | 3.3E-35 | IPR011989 |
| SMART | SM00185 | arm_5 | 452 | 492 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 411 | 451 | 9.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 288 | 328 | 1.5E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 370 | 410 | 0.74 | IPR000225 |
| SMART | SM00185 | arm_5 | 329 | 369 | 0.058 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 164 | 227 | 7.8E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 160 | 234 | 45.893257 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 422 | 464 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 299 | 341 | 12.4424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 340 | 382 | 8.5924 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_021716169.1 | U-box domain-containing protein 13-like [Chenopodium quinoa] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LCK3 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology