Basic Information
Locus ID:
gene:ENSEOMG00000006541
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 3035092 | 3037984 | + | gene:ENSEOMG00000006541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 58,293.58 Da | 45.04 | 77.91 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 125 | 201 | 1.5E-7 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 80 | 111 | 6.0E-5 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 225 | 262 | 1.1E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 162 | 3.79E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 262 | 3.71E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 208 | 1.59E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 161 | 1.1E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 197 | 432 | 1.1E-65 | - |
| SMART | SM00647 | ibrneu5 | 205 | 262 | 0.029 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 150 | 201 | 2.7E-4 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 76 | 266 | 29.883524 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 130 | 9.951762 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021762673.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ4 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology