Basic Information
Locus ID:
gene:ENSEOMG00000006169
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 12 | 5062694 | 5064688 | - | gene:ENSEOMG00000006169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 11,268.90 Da | 63.56 | 90.50 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 58 | 3.55841E-20 | - |
| Pfam | PF04564 | U-box domain | 9 | 82 | 2.6E-23 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 87 | 6.1E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | 4.6E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 78 | 7.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 85 | 37.295238 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021720566.1 | E3 ubiquitin-protein ligase PUB24-like [Chenopodium quinoa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM6 | U-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology