Basic Information
Locus ID:
gene:ENSEOMG00000005931
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 12 | 11414562 | 11423051 | - | gene:ENSEOMG00000005931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 63,771.34 Da | 50.81 | 67.38 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 319 | 595 | 6.69835E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 357 | 389 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 513 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 347 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 320 | 595 | 8.49E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 443 | 1.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 595 | 2.8E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 557 | 595 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 555 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 433 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 472 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 347 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 513 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 5.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 357 | 392 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 564 | 595 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 398 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 482 | 522 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 322 | 356 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 564 | 595 | 9.539323 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 334 | 348 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 376 | 390 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 220 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021763453.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAL8 | LisH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology