Basic Information
Locus ID:
gene:ENSEOMG00000005198
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 12 | 24527665 | 24541924 | - | gene:ENSEOMG00000005198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 85,311.36 Da | 34.77 | 85.45 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 436 | 477 | 5.6E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 370 | 420 | 1.1E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 232 | 287 | 9.5E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 431 | 480 | 1.07E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 510 | 562 | 4.53E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 661 | 753 | 1.24E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 507 | 568 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 424 | 505 | 1.4E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 656 | 771 | 6.4E-6 | - |
| SMART | SM00249 | PHD_3 | 509 | 566 | 0.0036 | IPR001965 |
| SMART | SM00249 | PHD_3 | 436 | 477 | 1.6E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 507 | 568 | 8.5377 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 434 | 479 | 10.1486 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 437 | 476 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021716692.1 | uncharacterized protein LOC110684560 isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N8F8 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology