Basic Information
Locus ID:
gene:ENSEOMG00000005102
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 19635187 | 19641316 | + | gene:ENSEOMG00000005102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 42,004.80 Da | 42.48 | 75.70 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 258 | 281 | 0.0022 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 296 | 324 | 3.8E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 294 | 325 | 7.45E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 250 | 288 | 4.1E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 327 | 358 | 7.7E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 289 | 326 | 4.3E-12 | - |
| SMART | SM00547 | zf_4 | 331 | 355 | 0.0024 | IPR001876 |
| SMART | SM00547 | zf_4 | 260 | 284 | 0.056 | IPR001876 |
| SMART | SM00547 | zf_4 | 298 | 322 | 2.5E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 296 | 325 | 10.217952 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 329 | 358 | 8.67092 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 258 | 287 | 9.506543 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 262 | 281 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 300 | 319 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 333 | 352 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 245 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021759303.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology