Basic Information
Locus ID:
gene:ENSEOMG00000004278
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 11 | 56650655 | 56697255 | - | gene:ENSEOMG00000004278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 465,660.78 Da | 45.69 | 90.72 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2202 | 2349 | 6.6E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4046 | 4118 | 2.9E-5 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3193 | 3311 | 8.7E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1974 | 2119 | 5.8E-12 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 110 | 5.1E-32 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 581 | 802 | 1.7E-28 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 399 | 4.5E-64 | IPR031646 |
| SUPERFAMILY | SSF50729 | PH domain-like | 818 | 895 | 2.72E-6 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 809 | 917 | 2.3E-5 | IPR011993 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3082 | 3100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3080 | 3100 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021765742.1 | uncharacterized protein LOC110730261 isoform X3 [Chenopodium quinoa] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUA7 | PH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology