Basic Information
Locus ID:
gene:ENSEOMG00000003636
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
protein At4g01020, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1 | 85330696 | 85332117 | + | gene:ENSEOMG00000003636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 42,197.34 Da | 56.93 | 80.86 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 242 | 292 | 2.5E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 298 | 2.47E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 232 | 8.54E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 363 | 5.05E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 288 | 367 | 1.4E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 236 | 4.4E-8 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 293 | 358 | 0.46 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 224 | 292 | 5.4E-8 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 202 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 156 | 365 | 28.062199 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 176 | 185 | - | IPR017907 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 345 | 367 | - | IPR013087 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01020.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021758648.1 | ATP-dependent RNA helicase DEAH12, chloroplastic-like [Chenopodium quinoa] | 0 |
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KW59 | RNA helicase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003636, gene:ENSEOMG00000025916 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717971 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033480.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07910 |