Basic Information
Locus ID:
gene:ENSEOMG00000001268
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 10 | 62267321 | 62268440 | + | gene:ENSEOMG00000001268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 16,068.25 Da | 50.85 | 83.94 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08969 | USP8 dimerisation domain | 2 | 93 | 2.4E-13 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 1 | 115 | 1.44E-5 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 123 | 7.9E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 122 | - | - |
| Coils | Coil | Coil | 82 | 102 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803NAF0 | USP8_dimer domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology