Basic Information
Locus ID:
gene:ENSEOMG00000000970
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Interconversion of serine and glycine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1 | 63939878 | 63943874 | - | gene:ENSEOMG00000000970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 28,424.66 Da | 47.96 | 85.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00464 | Serine hydroxymethyltransferase | 1 | 203 | 2.0E-76 | IPR039429 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 1 | 255 | 1.01E-81 | IPR015424 |
| Gene3D | G3DSA:3.40.640.10 | - | 1 | 104 | 1.0E-43 | IPR015421 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 105 | 256 | 1.8E-51 | IPR015422 |
| ProSitePatterns | PS00096 | Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. | 24 | 40 | - | IPR019798 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00460 (Cyanoamino acid metabolism)
map00460 (Cyanoamino acid metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00670 (One carbon pool by folate)
map00670 (One carbon pool by folate)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko01523 (Antifolate resistance)
map01523 (Antifolate resistance)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36370.1 | serine hydroxymethyltransferase 7. Encodes a putative serine hydroxymethyltransferase. | 0 |
| RefSeq | XP_021746878.1 | serine hydroxymethyltransferase 7-like [Chenopodium quinoa] | 0 |
| Q84WV0 | Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N0J5 | Serine hydroxymethyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000000970 |
| Apiaceae | Apium graveolens | 1 | Ag6G02827 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020030 |
| Brassicaceae | Brassica nigra | 5 | BniB01g013650.2N, BniB04g036870.2N, BniB06g058710.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0209 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12324, nbisL1-mrna-12360, nbisL1-mrna-1654 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16609 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106080 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002798 |