Basic Information
Locus ID:
gene:ENSEOMG00000000705
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 10 | 61270882 | 61277578 | + | gene:ENSEOMG00000000705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 49,021.99 Da | 37.62 | 71.69 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 314 | 0.0029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 157 | 193 | 1.7E-5 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 128 | 148 | 6.4E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 353 | 0.027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 442 | 2.01E-45 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 124 | 149 | 3.66E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 234 | 449 | 9.7E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 233 | 2.4E-11 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 126 | 150 | 6.0E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 35 | 58 | 0.028 | IPR000571 |
| SMART | SM00320 | WD40_4 | 317 | 354 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 401 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 314 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 193 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 441 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 193 | 8.992876 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 33 | 59 | 11.018674 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 323 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 317 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 202 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 124 | 151 | 13.816626 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 324 | 353 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 301 | 315 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 301 | 315 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 341 | 355 | 1.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021765203.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0J9 | C3H1-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology