Basic Information
Locus ID:
gene:ENSEOMG00000000580
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 10 | 3580658 | 3581257 | + | gene:ENSEOMG00000000580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 20,267.50 Da | 41.45 | 92.11 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 92 | 134 | 2.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 149 | 4.04E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 138 | 4.4E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 134 | 10.645153 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021714091.1 | RING-H2 finger protein ATL80-like [Chenopodium quinoa] | 0 |
| Q9LM69 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LNP2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah027274 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000000580 |