Basic Information
Locus ID:
gene:ENSEOMG00000000267
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 10 | 2582688 | 2588995 | - | gene:ENSEOMG00000000267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 79,335.02 Da | 32.67 | 81.76 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 267 | 323 | 8.98978E-32 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 332 | 672 | 6.5E-31 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 268 | 323 | 7.5E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 253 | 324 | 1.54E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 162 | 674 | 7.9E-72 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 481 | 641 | 7.2E-220 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 165 | 692 | 7.2E-220 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 115 | 3.9E-23 | IPR043151 |
| SMART | SM00439 | BAH_4 | 17 | 131 | 0.0095 | IPR001025 |
| SMART | SM00298 | chromo_7 | 267 | 326 | 3.5E-10 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 163 | 682 | 41.798641 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 268 | 321 | 12.086901 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 11 | 131 | 14.235359 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 427 | 440 | 4.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 164 | 180 | 4.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 381 | 395 | 4.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 264 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021752610.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KXW9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology