Basic Information
Locus ID:
evm.TU.utg000079l.6
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000079l | 31941 | 36173 | + | evm.TU.utg000079l.6 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 45,937.31 Da | 45.70 | 73.88 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 6.40468E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 1.81138E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 3.7081E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 2.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 319 | 3.5E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 2.0E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 219 | 1.61E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 343 | 2.85E-18 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 40 | 132 | 2.15E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 340 | 3.3E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 135 | 6.7E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 238 | 4.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 2.1E-23 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 140 | 213 | 0.0033 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 1.4E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 4.7E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.214708 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.011795 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.220978 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_048329396.1 | oligouridylate-binding protein 1B isoform X1 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology