Basic Information
Locus ID:
evm.TU.utg000061l.25
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000061l | 225870 | 230244 | + | evm.TU.utg000061l.25 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 48,745.22 Da | 49.45 | 65.97 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 360 | 388 | 3.6E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 284 | 306 | 1.8E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 321 | 349 | 3.6E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 319 | 348 | 3.84E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 274 | 310 | 1.79E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 353 | 389 | 5.02E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 273 | 313 | 6.2E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 352 | 389 | 3.9E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 390 | 423 | 4.7E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 315 | 351 | 3.5E-11 | - |
| SMART | SM00547 | zf_4 | 395 | 419 | 0.074 | IPR001876 |
| SMART | SM00547 | zf_4 | 323 | 347 | 2.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 284 | 308 | 1.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 362 | 386 | 5.6E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 282 | 311 | 9.212946 | IPR001876 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 16 | 5.0 | - |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 360 | 389 | 11.019698 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 321 | 350 | 9.054855 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 393 | 422 | 8.862888 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 397 | 416 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 286 | 305 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 364 | 383 | - | IPR001876 |
| Coils | Coil | Coil | 227 | 247 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_007209173.1 | zinc finger protein VAR3, chloroplastic [Prunus persica] | 0 |
| TrEMBL | A0A2P2IWN0 | Zinc finger protein VAR3ic OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology