Basic Information
Locus ID:
evm.TU.utg000033l.92
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 813595 | 814910 | + | evm.TU.utg000033l.92 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.16 | 39,830.44 Da | 24.50 | 80.98 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 359 | 1.50601E-141 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 353 | 1.6E-87 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 259 | 324 | 8.12E-12 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 355 | 2.0E-74 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 40 | 355 | 8.8E-119 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 258 | 324 | 8.8E-119 | IPR029070 |
| SMART | SM00636 | 2g34 | 26 | 353 | 1.1E-105 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 368 | 76.157829 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 133 | 141 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_006381896.2 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YJ21 | GH18 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012284 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology