Basic Information
Locus ID:
evm.TU.utg000033l.85
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 771726 | 775162 | - | evm.TU.utg000033l.85 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 81,482.91 Da | 41.18 | 97.70 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 337 | 2.28893E-156 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 354 | 653 | 1.01438E-157 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 76 | 331 | 6.6E-7 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 359 | 649 | 1.2E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 337 | 1.62E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 353 | 654 | 2.25E-45 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 338 | 6.9E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 352 | 655 | 2.6E-48 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 338 | 28.482939 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 354 | 654 | 29.944557 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_034907754.1 | glycerophosphodiester phosphodiesterase GDPDL6-like [Populus alba] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5MFB0 | glycerophosphodiester phosphodiesterase OS=Salix brachista OX=2182728 GN=DKX38_010117 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology