Basic Information
Locus ID:
evm.TU.utg000033l.565
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 4543721 | 4545503 | - | evm.TU.utg000033l.565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 57,501.28 Da | 45.42 | 105.60 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 47 | 1.5E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 157 | 335 | 2.94E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 70 | 1.57E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 3.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 92 | 413 | 1.6E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 14 | 53 | 0.009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16930.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_006427013.1 | F-box/LRR-repeat protein At4g14103 isoform X2 [Citrus clementina] | 0 |
| Q9FZ52 | F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LVS2 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology