Basic Information
Locus ID:
evm.TU.utg000033l.487
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 3838150 | 3840941 | + | evm.TU.utg000033l.487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 50,820.95 Da | 41.11 | 91.28 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 285 | 415 | 1.52695E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 76 | 274 | 4.67421E-136 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 97 | 258 | 1.1E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 298 | 406 | 7.8E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 141 | 426 | 5.4E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 62 | 280 | 8.2E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 445 | 6.1E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 325 | 406 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 91 | 288 | 1.7E-56 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 72 | 100 | 10.552991 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 103 | 273 | 29.503319 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 284 | 445 | 25.810627 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 219 | 227 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_052210185.1 | eukaryotic initiation factor 4A-14 [Diospyros lotus] | 0 |
| Q40465 | Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UIP2 | eukaryotic initiation factor 4A-14 OS=Sesamum indicum OX=4182 GN=LOC105178418 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology