Basic Information
Locus ID:
evm.TU.utg000033l.420
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 3280190 | 3285033 | + | evm.TU.utg000033l.420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 44,965.76 Da | 42.02 | 66.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 249 | 323 | 1.77586E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 129 | 203 | 3.90962E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 45 | 115 | 3.89573E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 200 | 1.3E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 251 | 317 | 1.9E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 111 | 6.5E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 232 | 327 | 5.29E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 42 | 207 | 6.83E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 122 | 223 | 5.7E-28 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 226 | 326 | 7.4E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 35 | 121 | 2.5E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 129 | 202 | 3.9E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 44 | 113 | 6.2E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 250 | 319 | 6.2E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 44 | 113 | 16.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 129 | 202 | 2.6E-5 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 117 | 14.931036 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 249 | 323 | 14.50465 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | 17.762232 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 246 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011039952.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X1 [Populus euphratica] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M1J5 | Uncharacterized protein MANES_16G093200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology