Basic Information
Locus ID:
evm.TU.utg000033l.39
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 338549 | 348987 | - | evm.TU.utg000033l.39 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 140,998.59 Da | 40.31 | 81.70 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 1005 | 1039 | 9.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 543 | 577 | 0.001 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 926 | 1185 | 1.22E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 437 | 753 | 1.22E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 396 | 603 | 2.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 924 | 1194 | 1.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 606 | 919 | 1.1E-13 | IPR015943 |
| SMART | SM00668 | ctlh | 119 | 177 | 8.3E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1000 | 1039 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 530 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 957 | 997 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 667 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 710 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 469 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 577 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 754 | 60.0 | IPR001680 |
| SMART | SM00667 | Lish | 89 | 121 | 3.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1091 | 1132 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 621 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 912 | 954 | 85.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 89 | 121 | 10.22414 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 543 | 586 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1007 | 1039 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 119 | 177 | 13.795317 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1007 | 1039 | 10.047417 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 64 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028189272.1 | topless-related protein 4-like isoform X2 [Glycine soja] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A445I5Q7 | Topless-related protein 4 isoform B OS=Glycine soja OX=3848 GN=D0Y65_030847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology