Basic Information
Locus ID:
evm.TU.utg000033l.142
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 1175647 | 1180457 | + | evm.TU.utg000033l.142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 54,765.89 Da | 47.28 | 85.96 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 202 | 5.9E-15 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 217 | 266 | 8.3E-8 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 46 | 75 | 1.3E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 371 | 4.18E-5 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 271 | 3.69E-51 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 141 | 275 | 3.3E-26 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 383 | 3.7E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 140 | 7.1E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 2.2 | IPR002110 |
| SMART | SM00184 | ring_2 | 315 | 364 | 0.0069 | IPR001841 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.036 | IPR002110 |
| SMART | SM00248 | ANK_2a | 174 | 203 | 3.3E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 217 | 246 | 2.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 4.0E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 174 | 206 | 12.636 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.33032 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 9.030149 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 365 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.35067 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 217 | 248 | 10.975266 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.301834 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 217 | 249 | 12.18193 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 174 | 202 | 12.195709 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 330 | 339 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 233 | 247 | 2.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 175 | 190 | 2.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_048227981.1 | E3 ubiquitin-protein ligase XBAT32 isoform X1 [Ricinus communis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JXI0 | Putative E3 ubiquitin-protein ligase XBOS32 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology