Basic Information
Locus ID:
evm.TU.utg000028l.68
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000028l | 633205 | 638832 | - | evm.TU.utg000028l.68 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 83,298.63 Da | 46.88 | 93.91 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 364 | 663 | 6.20869E-165 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 346 | 4.56239E-158 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 369 | 658 | 2.4E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 363 | 664 | 8.11E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 49 | 346 | 1.99E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 362 | 663 | 6.8E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 346 | 6.2E-35 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 363 | 664 | 35.173901 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 347 | 32.486149 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 738 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2K3S5 | glycerophosphodiester phosphodiesterase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology