Basic Information
Locus ID:
evm.TU.utg000027l.428
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5983635 | 5987534 | + | evm.TU.utg000027l.428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 53,210.81 Da | 52.12 | 77.32 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 173 | 344 | 6.2E-77 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 269 | 342 | 1.3E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 160 | 268 | 1.1E-40 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 467 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_021642543.1 | ubiquitin fusion degradation protein 1 homolog [Hevea brasiliensis] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067L4X4 | Ubiquitin fusion degradation protein 1 homolog OS=Jatropha curcas OX=180498 GN=JCGZ_02973 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology