Basic Information
Locus ID:
evm.TU.utg000027l.413
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5830176 | 5834904 | - | evm.TU.utg000027l.413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 72,075.73 Da | 39.26 | 99.07 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 2.59941E-28 | - |
| Pfam | PF04564 | U-box domain | 257 | 327 | 1.0E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 4.3E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 588 | 6.3E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 423 | 5.5E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 333 | 7.07E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 628 | 3.73E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 343 | 467 | 5.3E-27 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 118 | 1.8E-10 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 5.4E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 468 | 636 | 1.6E-28 | IPR011989 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.11 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.5E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.0053 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 4.8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 8.7E-37 | IPR003613 |
| SMART | SM00185 | arm_5 | 590 | 630 | 180.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 46.494766 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 12.5474 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 664 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_021627632.1 | U-box domain-containing protein 13 [Manihot esculenta] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYI5 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology